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01 - Angry Eyes
In year 72 of the Cosmic Era, the Junius Treaty brought the hostilities between ZAFT and the Earth Alliance to a formal conclusion. The treaty banned all military use of nuclear weapons and nuclear power, and placed strict limits on the size of the ZAFT and Earth Alliance forces. However, there are still tensions between the genetically enhanced Coordinators and the unmodified Naturals, and the peace between them remains fragile.
In October of C.E. 73, Cagalli Yula Athha, chief representative of the neutral Orb Union, arrives at the ZAFT military station Armory One. She is accompanied by her bodyguard, the former ZAFT soldier Athrun Zala, who now goes by the alias Alex Dino. Cagalli meets with Chairman Gilbert Durandal of the PLANT Supreme Council to voice her concerns about ZAFT's recent arms buildup. Their conversation is interrupted as mysterious intruders attack Armory One and capture three of ZAFT's newest Gundam mobile suits.
02 - Those Who Call For War
With Armory One under attack, Athrun commandeers a ZAFT mobile suit to get Cagalli to safety. The three captured Gundams engage Athrun's ZAKU in combat, but he is rescued by the sudden appearance of the young ZAFT pilot Shinn Asuka and his Impulse Gundam.
Outside Armory One, the enemy mothership Girty Lue joins the battle and wipes out the ZAFT defense fleet. Shinn and his comrade Rey Za Burrel attempt to pursue the stolen Gundams as they escape from Armory One, only to find the enemy commander waiting for them in the darkness of space.
03 - Warning Shots
Shinn and Rey struggle against the enemy commander Neo Roanoke. In order to help her pilots, ZAFT Captain Talia Gladys orders the newly constructed warship Minerva to launch from Armory One and join the battle. The enemy forces withdraw, and the Minerva gives chase.
Although Cagalli and Athrun have ended up aboard the Minerva, the apologetic Chairman Durandal informs them that there is no time to send them home to Orb. Durandal gives Cagalli a tour of the ship, and she reacts with anger to the sight of all ZAFT's new weaponry.
04 - Stardust Battlefeild
The Minerva follows the Girty Lue into the debris belt that surrounds Earth, and sends Shinn and his comrade Lunamaria Hawke in pursuit of the enemy mothership. However, Neo has tricked the ZAFT pilots into following a decoy. While the three stolen Gundams ambush Shinn and his comrades, the Girty Lue doubles back to attack the undefended Minerva.
Just as all seems hopeless, Athrun devises a plan to help the Minerva escape from the enemy trap. Neo recalls his forces, and the battered Minerva is forced to abandon its pursuit. It seems as if the fighting is finally over, but an even greater crisis is already developing.
05 - Scars That Won't Heal
Aboard the Minerva, Chairman Durandal receives shocking news. The ruins of Junius Seven, the PLANT that was destroyed in the infamous Bloody Valentine incident and where the armistice treaty was later signed, have left their stable orbit and begun falling towards Earth.
ZAFT swiftly dispatches a demolition crew commanded by Yzak Joule to break up the remnants of Junius Seven, but it becomes clear that this is no mere accident when the demolition crew is attacked by what appear to be ZAFT mobile suits. As the Minerva arrives at Junius Seven to provide support, Athrun volunteers to join the battle.
06 - The End Of The World
The Minerva launches its mobile suits to support Yzak and his demolition crew. Shinn, Rey, Lunamaria, and Athrun join the battle against the mysterious group who have sent Junius Seven falling towards Earth. The situation becomes even more chaotic as the Girty Lue arrives and the stolen Gundams enter the fray.
In the middle of all this fighting, the demolition crew complete their work and break up the ruins of Junius Seven. The Minerva follows the remaining fragments into the atmosphere in order to break them up even further, while Shinn and Athrun continue fighting the last of the mysterious mobile suits and confront the enemy leader.
07 - Land Of Confusion
Despite the heroic efforts of its crew, the Minerva has been unable to avert disaster, and the fragments of Junius Seven inflict terrible damage as they fall across Earth's surface. The Minerva retrieves Shinn and Athrun as they descend to Earth, then sets course for Orb in order to return Cagalli and repair the damage it has suffered in its space battles.
Meanwhile, the anti-Coordinator group Blue Cosmos is already moving to take advantage of this disaster. Lord Djibril, the new leader of Blue Cosmos, confers with the other members of the Logos secret society to plan their response.
08 - Junction
Once the Minerva arrives in Orb, Cagalli resumes her duties as Chief Representative. Her prime minister, Unato Ema Seiran, tells her of the damage caused by the fall of Junius Seven and urges her to approve an alliance with the Atlantic Federation.
The engineers of Morgenroete begin repair work on the Minerva, supervised by the former Archangel captain Murrue Ramius. Athrun meets with his old friends Kira Yamato and Lacus Clyne, who have taken refuge in Orb after their island home was flooded by the fall of Junius Seven. At last Athrun decides to return to space to meet with Chairman Durandal, leaving Cagalli with an unexpected parting gift.
09 - Bared Fangs
The Atlantic Federation and its allies declare war on the PLANTs in response to the fall of Junius Seven. Although Chairman Durandal still hopes for a diplomatic solution, the ZAFT forces are mobilized to defend the PLANTs. Yzak and his comrade Dearka Elsman join the battle only to discover that they are fighting decoys while the Earth Forces attack the PLANTs with nuclear weapons.
As the battle rages, Athrun waits on the sidelines for a chance to talk to Durandal. He is surprised to encounter a young woman who looks just like Lacus, and is even more stunned when the impostor greets him as if they were long-separated lovers.
10 - A Father's Spell
Chairman Durandal tells the horrified Athrun the details of the Earth Forces' latest attack on the PLANTs. Giving up his Alex Dino alias, Athrun admits his true identity and begs Durandal not to let this conflict escalate into another war. As the citizens of the PLANTs call for revenge, the impostor Lacus Clyne appears on their screens to calm their anger.
Durandal admits that he has created a false Lacus to influence the PLANT citizens, and tells Athrun that he wishes to make use of his strengths as well. After offering Athrun the use of a powerful new Gundam, Durandal leaves him to consider his options. Meer Campbell, the Lacus impersonator, meets Athrun again and invites him to dinner.
11 - The Chosen Path
The conflict continues to escalate as Earth Forces fleets encircle the ZAFT bases at Gibraltar and Carpentaria, and the PLANT Supreme Council decides to strike back in the name of self-defense. Despite her best intentions, Cagalli yields to her ministers' demands that Orb ally itself with the Atlantic Federation. The Minerva receives a warning message and prepares to leave Orb before it is too late.
In the PLANTs, Athrun visits the grave of his old comrade Nicol Amalfi. He is escorted by Yzak and Dearka, who urge him to return to the ZAFT forces. And back in Orb, Cagalli faces a fateful decision of her own.
12 - Blood In The Water
The Minerva crew find an Earth Forces fleet waiting for them outside Orb's territorial waters, leaving them no choice but to somehow break through the enemy lines. While Rey and Lunamaria guard the ship, Shinn fights an aerial battle against the Earth Forces mobile suits, but the tide turns against them as the enemy deploys a huge mobile armor whose positron deflector shield can withstand even the Minerva's Tannhauser cannon.
Meanwhile, Athrun has finally decided to rejoin ZAFT. Chairman Durandal makes him a member of the elite special forces organization known as FAITH, and Athrun departs for Earth in the Saviour Gundam.
13 - Ressurected Wings
Thanks to Shinn's fighting prowess, the Minerva has overcome the Earth Forces fleet. As the ship continues on to Carpentaria, the Orb government concludes its alliance with the Atlantic Federation. Yuna Roma Seiran, the son of Orb's prime minister, pressures Cagalli to accept his marriage proposal in order to unite their nation.
Now that Orb has aligned itself with the Earth Forces, Kira and his friends are considering leaving for the PLANTs. But their plans are disrupted when their home is attacked by Coordinator special forces who have been sent to assassinate Lacus, and Kira is forced to enter the battlefield once again.
14 - Flight To Tomorrow
In the wake of the assassination attempt on Lacus, Kira and his friends realize that they have been targeted by the government of the PLANTs. Kira then receives a letter from his sister Cagalli, in which she tells him of her intention to marry Yuna and asks him to return Athrun's ring on her behalf. At last Kira decides on a course of action.
Though she is still haunted by thoughts of Athrun, Cagalli has resigned herself to a loveless marriage. But as the ceremony begins, Murrue and her comrades launch the rebuilt Archangel, and Kira takes flight in the Freedom to save Cagalli from this grim fate.
15 - Return To The Battlefield
Aboard the Archangel, Cagalli berates the crew for abducting her in the middle of her wedding ceremony. Kira gives Athrun's ring back to her, and gently asks Cagalli to join them in seeking a better answer to the world's problems.
After learning that the Minerva has left Orb, Athrun at last rejoins the ship at Carpentaria, bringing with him new orders from Chairman Durandal. Talia is surprised to learn that Durandal has made her a FAITH member as well, and by the details of the Minerva's next assignment. Their new mission will take them into western Eurasia, where ZAFT is launching a campaign against the Earth Forces' Suez base.
16 - Struggle In The Indian Ocean
As the Minerva makes its way through the Indian Ocean, it draws the attention of an old enemy, Neo Roanoke of the elite Phantom Pain taskforce. Neo calls in support from the nearby Earth Forces and launches an aerial assault on the Minerva. But while Shinn and Athrun battle the enemy in the air, the Minerva and its submarine escort come under attack from the water as well.
Shinn is drawn away from the battlefield and discovers the construction site of an Earth Forces frontline base. He is outraged to realize that the Earth Forces are using the local civilians for forced labor, and begins wiping out the enemy soldiers in a destructive rampage.
17 - The Soldier's Life
The fugitive Archangel is now hiding underwater in the neutral Kingdom of Scandinavia. Aboard the ship, Kira and his friends ponder their future plans. Despite the crimes of the Earth Forces, they can't bring themselves to trust Chairman Durandal, and Cagalli wonders what has become of Athrun since he returned to the PLANTs.
The Minerva arrives at the Mahamul base in the Persian Gulf. The local ZAFT forces are trying to isolate the Suez base by capturing the Earth Forces' Gulnahan power plant. However, they have been unable to get past the Lohengrin Gate, which is guarded by a huge positron cannon and a powerful mobile armor. Talia realizes that the Minerva must clear this obstacle in order to continue its journey.
18 - Attack of The Lohengrin
As the Minerva approaches the Lohengrin Gate, Athrun explains the battle plan to the other pilots. While the Minerva and the soldiers of the Mahamul base draw the attention of the Earth Forces, one pilot will attack the positron cannon via a hidden tunnel. Athrun selects Shinn to carry out this vital mission, and the hotheaded young pilot agrees after one of the local resistance fighters begs for his help.
Using data provides by the resistance, Shinn flies the separated parts of the Impulse Gundam through the darkness of the narrow tunnel. As he does so, his comrades fight a diversionary battle against the enemy's superior forces.
19 - The Hidden Truth
The Minerva continues on to the shore of the Black Sea and docks at the city of Diocuia. Recently liberated from the control of the Earth Forces, Diocuia is now the latest stop on Meer Campbell's morale-building concert tour. Chairman Durandal himself is also visiting the city, and he invites the Minerva's mobile suit pilots to a personal meeting.
In his conversation with the Minerva pilots, Durandal reveals the dark secret behind the current conflict. He blames the fighting on the secret society known as Logos, a group of industrialists and arms dealers who incite war for the sake of their own profits.
20 - Past
This episode recounts Shinn's personal history. During the previous war, Shinn and his family lived peacefully in the neutral nation of Orb, but eventually even Orb was drawn into the conflict. Clinging to its ideals, Orb refused to submit to the demands of the Earth Alliance, and Shinn lost his family in the invasion that followed.
Once the war was over, Shinn emigrated to the PLANTs and enlisted in the ZAFT forces. Still haunted by the fate of his family, he is determined to gain the power to protect those who are important to him.
21 - Wandering Eyes
After their meeting with Chairman Durandal, the Minerva pilots are treated to a day of vacation and given rooms in one of Diocuia's hotels, and Athrun receives an unexpected guest. The pilots also make the acquaintance of Heine Westenfluss, a FAITH member who has been assigned to the Minerva as an additional pilot.
Wandering by himself, Shinn sees a young woman falling into the sea and dives in to rescue her. This woman is in fact Stella Loussier, one of the "Extended" soldiers who attacked Armory One. Shinn calms the frantic Stella by promising to protect her, little suspecting her true identity.
22 - Sword Of The Blue Skies
Yielding to pressure from the Earth Forces, the government of Orb has agreed to join the fight against ZAFT. An Orb expeditionary fleet commanded by Yuna Roma Seiran is dispatched to back up Neo Roanoke's Phantom Pain taskforce.
Meanwhile, the tensions among the Minerva's pilots have begun to ease thanks to the influence of the cheerful newcomer Heine. Though Athrun is troubled by the prospect of fighting against Orb, he now has a better understanding of Shinn's feelings toward his homeland. The Minerva leaves the Black Sea to intercept the approaching Orb fleet, and the two sides meet in battle in the Dardanelles.
23 - The Shadows Of War
The battle between the Minerva and the Orb fleet has been disrupted by the sudden appearance of the Archangel and Kira's Freedom Gundam. Cagalli enters the battlefield and orders the Orb forces to cease fighting, but Neo pressures Yuna into continuing the battle, and the Orb fleet renews its attack on the damaged Minerva.
Since the Orb forces have rejected Cagalli's appeal, Kira sends her back to the Archangel and begins disabling both sides' mobile suits. Athrun tries to reason with his old friend, but he is unable to establish contact with Kira as the battlefield descends into chaos.
24 - Differing Views
The battered Minerva retreats to a port on the Sea of Marmara to repair the damage it sustained in the Dardanelles battle. Troubled by the chaos his former comrades created during the fighting, Athrun decides to leave the Minerva and go in search of the Archangel so that he can talk to Kira and the others in person.
The Minerva receives orders to investigate an abandoned Earth Forces research facility in the area. Shinn and Rey are sent to check out the facility, but Rey suffers a mysterious reaction as they explore the deserted Lodonia laboratory.
25 - The Place Of Sin
Athrun has arranged a meeting with Kira and Cagalli, but the old friends no longer see eye to eye. Even after hearing of the assassination attempt on Lacus, Athrun still believes in Chairman Durandal's good intentions, and he returns to the Minerva after urging his friends to keep Orb from participating in the war.
The Minerva travels to the Lodonia laboratory to retrieve Rey and continue the investigation. This abandoned facility proves to be a laboratory where the Earth Forces experimented on children to create Extended soldiers. At their own nearby base, the Extended pilots of Phantom Pain are shocked to hear that the Minerva has discovered the laboratory where they were raised.
26 - The Promise
After running off alone to the Lodonia laboratory, the Extended soldier Stella Loussier has been captured by the Minerva's pilots. Shinn brings the injured Stella aboard the Minerva, but the ship's doctors are unable to treat her due to her abnormal physiology. They also discover that Stella's memories have also been modified, and she now has no recollection of meeting Shinn.
Meanwhile, Lacus has decided to leave the Archangel and return to space in order to investigate the current situation in the PLANTs. Posing as the Lacus impersonator Meer Campbell, she steals a shuttle and escapes into the heavens.
27 - Unfulfilled Feelings
Even as Neo prepares for another attack on the Minerva, the ZAFT forces are on the trail of the Archangel and its crew. While Chairman Durandal supervises the pursuit of the fugitive Lacus, Captain Talia of the Minerva receives a report on Athrun's secret meeting with Kira and Cagalli.Yuna and Neo gather their forces around the island of Crete, hoping to catch the Minerva as it enters the Mediterranean Sea. Once again, the Orb fleet engages the Minerva in a fierce naval battle, and once again the Archangel crew decide to intervene in the fighting in hopes of preventing any further bloodshed.
28 - Survivors and Sacrafices
As the Minerva struggles against the combined Orb and Earth Forces fleets, the Freedom Gundam and the Archangel appear on the battlefield once more. Cagalli pleads with the Orb forces to cease fighting, but Yuna orders them to continue their assault on the Minerva.Casualties mount on both sides as the battle continues to escalate. Kira and Athrun confront one another in a heated duel, and Shinn carves a swath of destruction through the Orb fleet. Finally, the captain of the Orb flagship makes a fateful decision in order to bring this brutal conflict to an end.
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